Oat Cottage Cheese Pumpkin Muffins
These cottage cheese pumpkin muffins are tender, perfectly moist, full of those warm fall flavor, and perfectly sweetened with a little coconut sugar. They’re made with blended oats (so naturally gluten free!) and the cottage cheese gets blended smooth with the pumpkin, giving them a little protein boost without a cottage cheese chunk in sight. They’re hearty, easy, and exactly the kind of muffin I love having tucked in the fridge or freezer for busy fall mornings.

Apparently I need an oat flour + cottage cheese muffin for every season
Lately, it seems that I have been falling back in love with oat-based muffin recipes. And since, yes, cottage cheese is still very much having its moment (and I mean, for good reason…bonus stealthy protein is just as lovely as stealthy veggies) and, thus, the combo of oats and cottage cheese have been making it into my muffin creations as of late. After making my Blueberry Cottage Cheese Oat Muffins approximately a million times (okay, a few dozen), I started thinking that I kinda needed a fall version. An oat + cottage cheese muffin for all the seasons, perhaps? And what is more fall than pumpkin? Thus, these cottage cheese pumpkin muffins were my obvious next move.
Now, if that mouthful of a title slightly scares you with all the things I have crammed into these muffins, I want you to know that these beauties have gone through the full family-and-friends testing circuit. Neighbors. Ken and Allie. Heck, I brought one of my test batches to my parents’ house and my mom (who taught me how to cook) tried one and immediately asked when the recipe would be up on the site. The oats make them hearty (and naturally gluten-free!), but they’re still surprisingly fluffy…I don’t think anyone I’ve shared them with has guessed they’re made with oat flour. And if you’re cottage-cheese hesitant, you really don’t taste it. Pinky promise. Blending it smooth with the pumpkin, vanilla, eggs, coconut sugar, pumpkin pie spice, and cinnamon lets it just quietly do its protein-boosting thing in the background without its flavor or texture taking over.
These gluten-free cottage cheese muffins have also very quickly become one of those muffins that just…gets eaten around here. Like a lot.I’ve been grabbing one before a workout or during those “man, I’m hungry but I need to run” moments in the day, sticking them in lunch bags, or making them as meal prep so we can grab them as part of breakfast with some fruit and breakfast sausage or Canadian bacon on those chaotic weekday fall mornings. One thing I did learn while testing: use a nice thick pumpkin puree (some brands have added water and that extra moisture can make things tricky) and please please please give your batter its little rest before baking. Those oats need a minute to hydrate and soak everything up. Rush that part and you can end up with muffins that sink instead of getting that surprisingly fluffy oat-muffin texture we’re after.
Let’s make these muffins together. Just you and me…












Oat Cottage Cheese Pumpkin Muffins
Ingredients
- 2¼ cups (220 g) uncooked rolled oats, Use certified gluten-free if needed
- 1½ teaspoons pumpkin pie spice
- 1 teaspoon cinnamon
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- ¼ teaspoon salt
- 3 large eggs
- ¼ cup (59.15 ml) avocado oil
- 1 cup (230 g) low-fat cottage cheese
- ¾ cup (240 g) canned pumpkin puree, I found thicker brands, like Libby, worked best.
- ½ cup (77 g) coconut sugar, or unpacked light brown sugar
- 2 teaspoons (8 g) vanilla
- 1 teaspoon apple cider vinegar
- ⅓ cup mini chocolate chips
Instructions
- Heat the oven to 375℉. Line 12 compartments of a standard muffin tin with paper liners or grease with oil spray.
- Add the oats, pumpkin spice, cinnamon, baking powder, baking soda and salt to your blender. Blend until the mixture looks like flour, about 30 seconds. Pour the oat flour into a large bowl and set aside.
- Add the eggs, cottage cheese, pumpkin puree, oil, coconut sugar, vanilla and vinegar to a blender. Blend until all the ingredients are combined and very smooth.
- Pour the contents of the blender into the mixing bowl with the oat flour mixture. Add the chocolate chips to the bowl too.
- Stir until the dry ingredients are just incorporated into the batter. Careful not to over mix! Let the batter rest for at least 15 minutes so that the oat flour can soak up the moisture. This helps the texture of the muffin and prevents muffins from sinking.
- Use a heaping 1/4 cup measuring cup or scoop to divide the batter into the 12 prepared muffin cups and top each one with a few more chocolate chips, if you’d like.
- Bake until the tops are lightly golden brown and the muffins have an internal temperature of 200℉, about 16-18 minutes.
- Allow muffins to cool completely then enjoy or store in an airtight container at room temperature for a day then refrigerate for 4 to 5 days. Muffins can be individually wrapped then frozen for up to 2 months.
Notes
- If you already have oat flour, you can replace the blended oats with 220g of oat flour. Just make sure they are certified gluten free if these being celiac-safe is needed.
- I have made these with full-fat cottage cheese and they work great, but I don’t recommend using fat-free. In my testing, there is too much water in fat-free and it results in the muffins sinking.
- I have tested this recipe with maple syrup and honey and found that it added too much moisture to the batter and the muffins had a wet texture, so I don’t suggest swapping out the granulated dry sweetener with a liquid one in this recipe.


Could I use something other than pumpkin? It is not my favorite flavor but I like the idea of oats and cottage cheese.
Thanks
You could do sweet potato or even butternut squash. Or for something totally different, these were the inspo for this recipe and have both oats and cottage cheese https://thenaturalnurturer.com/oat-blueberry-cottage-cheese-muffins/
Made these ASAP and love them!! Chose to not add chocolate chips to all of them, and both ways are so yummy! ❤️
Yay!!! I love when someone jumps on a recipe the day they come out! And even more so when they love it. I’m so glad you enjoyed these, Morgan! Thanks for coming back and sharing!
I had both pumpkin puree and cottage cheese sitting in my fridge needing to be used up, when this recipe popped into my inbox- seemed I was destined to make these muffins. I only had 3/4 c of cottage cheese, so I used Greek yogurt to get up to a full cup, but that’s the only sub I made. They were so yummy! They baked up tall and fluffy! I knew Taesha ‘s recipe wouldn’t disappoint!
Oh I am so glad you trusted me when you saw these! Totally an unlikely pairing for a muffin but they are so good and I’m delighted you loved them too!
Just made a double batch of these in mini muffin form (it made 60!). Fluffy as can be, simple to make, and kiddo (and mama) approved! They finished baking just before we hosted a playdate and little hands kept coming back to grab more. What a win! These, like so many of your recipes, will be added to our regular rotation 😀
Oh yayyyy! I am so glad the littles loved them (especially considering you had 60!). Thanks for trusting me and my wacky muffin ways 💚
Love these!!! I am with you on oat muffins, more the better.
I made 2 changes ….monk fruit for the coconut sugar and as much as I love chocolate chips, I substituted with pumpkin seeds for a change as we love them also. Another hit in my house.
Thanks again
OMG I love your swaps, Denise! I have some pumpkin seeds hanging in my pantry begging for a use!
This recipe is delicious and bursting with fall flavors. I’m curious if it’s gluten-free. Do you need to use xanthan gum to prevent the muffins from crumbling?
I did not. I just used my oats. Did you find them crumbly??
I made these muffins today with my kids, and they were a hit! They were a little skeptical about the cottage cheese when they helped me put it into the blender, but they completely changed their minds once the muffins came out of the oven. They loved them. We will definitely be making these again!
YYessssssss! I love this all so much, Melissa! The fact that you made them with your kids. The fact that they won them over. Oh man, made my morning! Thanks for coming back and sharing!
Originally posted this comment on the wrong recipe. Reposting here because I want others to know that these muffins are delicious. I have tried other cottage cheese muffin recipes and they have not turned out that great. These oat flour pumpkin cottage cheese muffins will definitely be on repeat at our house.
My original comment:
I just made these today and they are delicious. I did sub butter for the avocado oil because that’s what I had on hand and I used oat flour (220 grams) rather than blending rolled oats into flour because I had some to use up. My teenager just came home and ate two right away. These will be perfect for my kids lunches and for me to enjoy as an afternoon snack.
Thank you for sharing. I am now looking forward to trying your other cottage cheese muffin recipes.
Thank you for taking the time to come back and leave a review on the correct recipe. I’m so delighted these fulfilled your cottage cheese muffin hopes!! We are mildly obsessed with them here and I can’t keep a batch stocked for long. I always appreciate knowing others enjoy my kitchen creations just as much
If I use oat flour instead of the oats, how much should I use? It says 2 1/4 cups of oats or oat flour, but those are not equal measurements so I’m wondering how much of the oat flour to use.
Hi Sue. For oat flour, weigh out the 220g grams as the weight won’t change
I’ve been looking for a good, healthy pumpkin muffin recipe, and these were perfect! These will definitely be a new staple in my house!
Hi Elaine! So glad to hear these fulfilled your pumpkin muffin dreams! And honored they will be a frequent flyer over in your home. Thanks for popping back and sharing!
Another fabulous recipe that my toddler adores! Love that these are high in protein and I swapped the chocolate chips for chopped pecans. 🙂
Music to my ears, Danica! Thanks for always coming back and sharing. I love seeing your name pop up in my comments
Made these this weekend! They were excellent!
Yay! So glad you loved them, Jessica! Thanks for popping back and sharing!
These are delicious!! I made them last week for my family and am making them again for a Fall potluck!
Yay! I am so glad to hear that, Maleeva! And I love that you loved them so much that you want to bring them to share! Thanks so much for coming back and sharing all that!
I have two questions! Can you make this into a loaf and can you replace the sugar with honey and or maple syrup? Thank you!
Hi Rose! I haven’t tried these as a loaf but they might work! However, I DID try to make these with maple syrup and between the pumpkin puree and the cottage cheese, it was too much moisture with the liquid sweetener and they always sank. Not terribly, but enough that I knew it would both people….so I went with the granulated sweetener for that reason.
Mine came out too dense. Maybe I didn’t grind the oats small enough or maybe I over mixed? I’d really like a cottage cheese muffin with white whole wheat flour (hint to your recipe development “team”). Do you think the wwf would be a one-one swap with the oat flour? I also made your morning glory muffins and they were perfect!
Hi Lisa! Oat flour can be a denser bake but I do have other cottage cheese muffins that use whole wheat flour instead of oat. I stopped developing recipes with white whole wheat flour because people shared that it was very hard for them to find. With that said, I think if you do have it, you can likely make this recipe work with upping the flour a bit more…like to 1 1/3 cup wwf flour in place of the www. https://thenaturalnurturer.com/chocolate-chip-carrot-cottage-cheese-muffins/
Mine came out really flat, but delicious!
Well, I am glad you loved the flavor but flat is kind of a bummer to hear! Did you let the batter rest before portioning out into the muffin tin? Also, is your baking powder old? I have learned the hard way that that stuff does expire and doesn’t work well when its past its prime!