Pumpkin Lentils Muffins
These Pumpkin Lentil Muffins are easy to make, fluffy, delicious and packed with lentils and eggs for a boost of protein without powder! The perfect healthy breakfast or snack that is kid-approved.

Why you need to make these pumpkin muffins
Muffins are delicious. There is no way around that! But many recipes floating around on Pinterest are made with tons of added sugar and not much protein. Not an ideal way to start the day off, in my book! Whenever I add a muffin recipe to the pages of TNN, I try to make them special and the healthiest, most delicious muffin you can cook up.
So why are these Pumpkin Protein Muffins special? And so dang good? Here are a few reasons to add these pumpkin muffins to your morning line-up:
- They’re loaded with the goodness of lentils! Lentils are not your typical muffin ingredient, I know..but I have had oodles of success adding them to blender muffins as a way to up the protein. Nope, you can’t taste the lentils, but they are in there next to all kinds of other good-for-you ingredients to help fuel you up and keep you going until your next meal.
- No refined sugar! I skipped the refined sugar in these muffins and lightly sweetened them with some maple syrup or honey instead.
- Flavorful. Full of pumpkin and warm fall spices, these muffins are so delicious.
- They’re easy to make! Whiz up the wet ingredients + lentils in the blender. Mix with the dry ingredients and into the oven they go! They are in the oven with less than 10 minutes of work and ready after about 20 minutes of baking.
- A great part of meal prep. These muffins are a great thing to stock in your fridge or freezer. They store great in the fridge for 4-5 days or make for a great freezer staple for months to come.
- Super adaptable! We all have different needs, preferences, or styles when it comes to our food. These muffins can be changed in a bunch of different ways to fit your needs. Check out the Suggested Adaptations section below for how to make these Pumpkin Protein Muffins work for you!

How to cook lentils for these protein muffins
I like to buy and cook my lentils from dry because they are cheaper and pretty low fuss to cook.
- To cook lentils for these protein muffins on the stove top, cover the lentils with water in a pot and bring the water to a boil. Reduce the heat and let the lentils simmer for about 20 minutes. Drain and let them cool a bit before adding to the recipe.
- To cook lentils for this recipe in the Instant Pot, combine 1/3 cup dry lentils with 1 1/2 cups water. Cook on HIGH pressure for 9 minutes (it will take about 5-6 minutes for your IP to reach pressure). Quick release the pressure once cook time is up. Drain and let the lentils cool a bit before adding to the recipe.
- To cook lentils for this pumpkin muffin recipe in your slow cooker or crockpot, combine the 1/3 cup dry lentils with 2-3 cups of water and cook on LOW for 4 hours or on HIGH for 2 hours (depending on slow cooker). Drain and let cool before adding to the recipe.
- Skip the dry lentils and buy precooked lentils! I find them in the fridge or freezer section of many health focused grocery stores! Just be sure they aren’t seasoned with anything or that will impact the flavor of these muffins.
Suggested Adaptations
- No pumpkin? You can use butternut squash puree or cooked and mashed sweet potato in this protein muffin recipe instead of pumpkin, if needed.
- Make them egg free by using 2 “flax eggs” in place of the eggs in this recipe.
- Need gluten free? Replace the white whole wheat flour with a cup-for-cup gluten free flour blend.
- No white whole wheat flour? You can make your own by mixing half all-purpose flour + half whole wheat flour. You can also use all whole wheat flour if needed, but the muffins might be a bit denser and have a slightly different flavor.
- Add a mix-in or topping. Chocolate chips, dried cranberries, raisins or chopped nuts would all be delicious additions to these Pumpkin Protein Muffins.
Tips for the best pumpkin muffins
- Don’t over mix. Seriously. Mixing the wet + dry ingredients together until just combined is key to fluffy muffins! Over mixing will often result in flat, dense muffins….and that is just a bummer.
- Let the muffins cool for at least 10 minutes. Muffins continue to bake even after they are removed from the oven and will firm up as they sit. Hot muffins also might stick to their muffin tin liners or muffin tin. So let them cool a bit…even if a hot pumpkin muffin is pure magic!
- Use parchment paper muffin liners. I love this brand and find they are the best for easy peeling muffin liners. Another great (no waste) option is silicone muffin liners.
- Fill muffin compartments 3/4 of the way full.
- Use pumpkin puree, not pumpkin pie filling. Pumpkin puree is JUST blended pumpkin, while pumpkin pie filling is pumpkin + sugar + spices.

How to store these protein muffins
I highly suggest storing these pumpkin muffins in an airtight container in your refrigerator. Because they are so moist, storing them in the refrigerator will keep them fresher longer and prevent molding.
Or, you can freeze these muffins. They freeze really well, so they are great for stocking up your freezer. I like to store them in a large freezer bag or freezer-safe large container.
To defrost, I like to take them out of the freezer and leave them on the counter to thaw overnight. Or if you want one NOW, you can warm a muffin in the microwave for about 20-30 seconds.
Other veggie-loaded muffin recipes to bake up!
- Vegan Carrot Muffins (with lentils)
- Veggie-Loaded Chocolate Protein Muffins
- Oatmeal Green Smoothie Muffins
- Cinnamon Zucchini Banana Muffins
- Butternut Squash Banana Blender Muffins
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Pumpkin Lentil Muffins
Ingredients
- 1¼ cup pumpkin puree, not pumpkin pie filling. I find the thicker brands like Libby work the best.
- 1 cup cooked and cooled green lentils, about 1/3 cup dry. See above for cooking suggestions
- 2 large eggs
- ¼ cup avocado oil , or neutral oil
- ⅓ cup maple syrup, or honey
- 2 teaspoons vanilla extract
- 2 teaspoon apple cider vinegar
- 1¼ cups white whole wheat flour, can sub cup-for-cup gluten free flour blend for GF
- 1 teaspoon baking soda
- 1 teaspoon baking powder
- 2 teaspoons pumpkin spice
- ¼ teaspoon salt
Equipment
- Muffin tin
Instructions
- Preheat your oven to 350℉ and line a 12-hole muffin tin with liners. Set aside.
- In your blender, combine pumpkin puree, cooked lentils, eggs, oil, maple syrup/honey, vanilla, and apple cider vinegar. Blend until mixture is smooth and set aside.
- In a medium bowl, combine flour, baking powder, baking soda, salt and pumpkin spice. Mix.
- Pour the contents of the blender into the bowl with the dry ingredients. Mix until just combine. DO NOT over mix. Over mixing can lead to dense, flat muffins.
- Portion batter into prepared muffin tin.
- Bake for 20-22 minutes or until a toothpick inserted into the middle comes out clean.
- Let cool in pan for 5 minutes before transferring to a cooling rack. Enjoy and let cool completely before storing any leftovers in an air-tight container in fridge or freezer.


This recipe looks great. I want to make a batch for back to school snacks. Do you think you can substitute red lentils for the green lentils?
Yes! Those have worked well in similar recipes for me.
These are delightful! They are perfectly sweet (ie, not too sweet), light and fluffy, with a lovely crumb. I made them thinking they would last the week as kid snacks, but seven of the 12 were gone before they even cooled. My 3-year-old and 5-year-old love them, as do my husband and I. These will be a regular at our house!
Yay! I am so glad to hear all of that, Jen!
These are super yummy! I don’t know who ate them faster me and my husband or our 2 year old. Surprisingly light, fluffy and filling.
SO glad you all loved them, Corinne! I know! You would think the lentils would make them heavy but they are so light and I love how they really keep you going!
Just made these, delish. The perfect amount of sweet! I substituted two ‘chia eggs’ because we have a friend visiting who has an egg allergy. They still came out light and fluffy. Thanks for such a fun recipe.
I am so glad, Minda!
I added dark chocolate chips! These muffins are amazing and I will continue to make this recipe as part of a regular rotation in my health journey!
I’m so glad to hear that, Melissa! And I love adding chocolate chips to these as well!
Am I missing where the flour was listed in the ingredients list!???
Oh I just saw it! Sorry 😬🤦 will try soon and report back
Okay, phew! I was scared for a minute that it somehow disappeared from the recipe. 🤪
I love all your recipes. Was wondering if oat flour can be substituted for the white whole wheat flour. I’m GF but try to stay away from GF flour substitutes. Thanks.
Hi Pat! I’m so glad you enjoy so many TNN recipes! I always love hearing that.
I actually tested these with oat flour at first and found that it was just too heavy with the added lentils. It works, structurally, but again…makes for a very dense muffin.
Thank you! I might try half oat flour and half.1:1 GF flour mix. ☺️
What can I use if I don’t have apple cider vinegar?
The ACV is there to help activate the baking soda. Regular white vinegar or lemon juice will work too.
It’s these kind of replies that really make me like you and your blog, Taesha. I love that you explain the purpose of each ingredient THEN give alternate suggestions, not JUST the substitutions. Just like the oat flour (made it a more dense texture, but structurally sound if they wanted to have a go with it.)
I feel like I have learned a lot about how to substitute items in recipes because of this type of advice you give. It is greatly appreciated!
That makes me so happy to hear, Lisa. I truly want to help people to feel at home and empowered in the kitchen!
Is the wet ingredients supposed to be larger than the dry? Mine seemed like there wasn’t enough flour.
Also, does the recipe double ok?
Hi Heather! The ingredients are correct. I know it seems like it won’t balance out, but they do! Did your batter look like the thickness of the one in the picture? And I have not tried to double it yet, but if you do, please let us know how it turns out!
Would it be possible to sub beans for the lentils? My son has a sensitivity to lentils.
I haven’t tried these with beans instead of lentils, but it might work. I’d say either chickpeas or white beans. If you try it, Amy, please let us know how they turn out!
My son absolutely loves these muffins! We were in such a breakfast funk before we found your recipes. Thank you for all the delicious ways to get my kids a breakfast with a ton of vitamins and protein to start their day. And as a bonus it gets them involved in the cooking process!
Love, love, love ALL of this! Your comment made my morning, Melanie. I am so happy my recipes work so well for your family. Thanks for taking the time to share.
Just made these yesterday for breakfast this week and they are really good! The whole family likes them, even my 1 yr old! Adding this to the regular rotation for sure 🙂
So happy to hear that, Stephanie!
I want to make it now. can I use orange lentils that I have??
Yes, those should work fine.
The texture, flavor and sweetness level of these muffins were perfection. The fact that it is much healthier than your typical muffin is a huge bonus.
Delighted you enjoyed these so much, Sandra!
Soft, delicious and easy to make. Love the extra protein and fiber from the lentils.
Love that you love this one, Trish! So much goodness packed into these muffins!
Hi! Can I substitute avocado oil with olive oil and white whole wheat flour with all purpose flour?
Hi Amy! YOu can swap the oils as long as you don’t mind the flavor of olive oil in baked goods I love it but O know not everyone does). You can use APF, but you might need to add a touch more flour since white whole wheat soaks up more moisture than white whole wheat.
These have become a staple in our house. Just made our first batch for fall and decided needed to leave a review because we love them so much. Have made with all types of lentils and they have always turned out great.
Yay! These are a fall staple here too. So hearty and full of seasonal flavors. Glad you all love them as much as we do!
Absolutely LOVE this recipe… I make a huge batch and freeze. Do you have a suggestion for adding in or substituting banana? My middle daughter is not crazy about the pumpkin (eldest and youngest love as is)… just trying to find a way for all 3 to enjoy.
So glad you enjoyed these, Rachel! If you are asking about swapping in banana for the pumpkin, you could totally do that with an even swap. However, the banana version will be much sweeter than the pumpkin version (not usually a bad thing when kids are involved!)
PHENOMENAL! I had leftover cooked red lentils and found this recipe searching for a way to use them! I also used Bob’s Red Mill Egg Replacer instead of eggs as I’m vegan. The result was a moist yet light and fluffy, perfectly sweetened muffin! This will be a new staple recipe in our household. Thank you!
Wooohoooo! I’m SO glad you loved these so much!
Dear Taesha, you really are muffin queen! Funny enough I have not baked muffins untill now. Muffins are not as popular in Europe as in US. I found them oily and hated peeling that sticking liner off. Now I find them ideally sized bites with no need to cut so no crumbles on countertop 🙂 I only came across your website when searching for recipe that would help me to smuggle zuchini into my family´s diet. Now I try one of your muffin recipes every day. Zuchini/Carrot, Morning glory or flourless peanut butter ones turned out great. I only wanted to express my grattitude to you for bringing interesting recipes full of vegetables that my family as non-vegetarians find not only edible but TASTY! Furthermore your recipes consist of actual food. No Xylithol, no erythritol… I am not vegan nor vegetarian just trying to cook healthier. But when I see recipes on some blogs I feel like I needed to turn my kitchen into chemical lab! I want to eat food and not Mendeleev table. I was very happy to see this recipe including lentils since I knew my husband would be more willing to eat “cake” knowing it included proteins and not just sugars. I was very surprised how tasty they turned out. I then tried different variations. I made them not with white wholemeal flour but dark spelt floour or “graham” flour and excluded all sugar and maple syrop and included just banana instead. Success. I also included extra cup of shredded carrots and extra cup of grated apples on top of your recipe – delicious. I just needed to bake them bit longer but despite extra moisture from apples they baked well. I replaced half of flour by homemade oat flour or one quater of flour by amaranth flour and pumpkin flour – still success. Especially changing one quarter of flour for pumpkin flour and including some pumpkin seeds into recipe let pumpkin note shine and pumpkin flour added it very nice smell. But in gerneral changing up to 25% of flour for different flours or adding extra ingerdients like flax seeds or shredded coconut did not change texture much and result was still delicious. I also tried to do them with chickpeas instead of lentils and tahini instead of oil. Delicous. I tried to make them with red lentils thinking that maybe milder taste of red lentils would alow me to include more lentils and thus increase protein content further. This was the only fail. They were still pretty good and edible but red lentils did not do as good job as green lentils since red lentils after cooking were mainly peel so taste was mediocre. Thank you!
Sofia, what a beautiful comment to wake up to this morning! I am so happy you have found success in so many of my recipes and that they help you to feed your family the way you want to! I adore that I have turned you into a muffin-lover and that this recipe has become such a great base recipe for you! Thanks for taking the time to share all your tests and experiences. So helpful!
Hi Taesha – can I use whole wheat flour instead of white whole wheat flour? Can’t wait to try this recipe!
Hi Anna! They will work with whole wheat flour, but they will be a bit denser than my version since whole wheat is a touch heavier. Just an FYI! Hope you love them
Thanks for the quick response and I will definitely use white whole wheat flour! Thank you!!
These muffins are amazing and the perfect amount of sweetness!! I can’t wait to try some of your other recipes! Also, I really love that you give tips and alternate suggestions for all of your recipes! So glad I found your blog/recipes!!
I’m so glad to have you here, Anna! So glad you enjoyed these and that all the tips/tricks are helpful. Thanks so much for taking the time to leave a comment!
These are a true treat! You are an absolute gift for sharing your recipes! Our high schooler wrestles and we needed to find some protein packed items that also provide some slight sweetness. These are a huge hit with our whole wrestling team. We bake double batches, pack them up, get a bottle of honey to drizzle and away we go!
*I haven’t tried it but could this transition to a bread loaf instead of muffins?
A team of high school athletes loves this recipe?! Well, if that isn’t the compliment of the week, I don’t know what is! Thats so amazing, Tanya! As for a loaf…I haven’t tried but it might! My trick is to cook baked goods (muffins, cakes or sweet breads) until they have an internal temp of 200F…because that means they are cooked through but not over cooked.
Love finding healthy recipes to sneak in foods my twin girls would never eat in their natural state like lentils! This one was an absolute WIN! My girls LOVE eating these with their breakfast. They think they are getting a “treat” because I put in the Enjoy Life allergen friendly mini choc chips but in reality they are getting some nice magnesium from the pumpkin and fiber from the lentils and we eat gluten free so subbed in a 1:1 GF flour no problem. Thank you for this low sugar healthy recipe!
Delighted they are such a hit with your girls, Kim! Thanks for taking the time to leave a review!
We love these muffins! I’ve made them exactly as written probably 10-15 times. They’ve quickly a staple in our house + a favorite of our toddler. Thank you for this recipe!
Oh I am SO glad you all love these so much! Thanks for taking the time to leave a review, Jordan. It is so appreciated.
Is it possible to swap in chickpeas instead of lentils (what I have on hand)?
I haven’t tried that swap myself but I think it would work!
Thank you so much for this great recipe! I made these today for my family and we all love them. I did them as mini muffins and cooked them for 14 minutes at 350 and they turned out great.
Aw that’s awesome! So glad they were such a hit!
Really enjoyed these! I ended up prepping and freezing a batch for post partum (worried about having too much dairy while breastfeeding) love that they have some veggies in them! Do you think I could sub grated apples for the pumpkin for a different variation? Appreciate the input!
I love that you made these for postpartum, Emily! So the perfect nourishing snack you can eat with one hand! I haven’t tried this with apple, but have a feeling if you grated it up and measured it..it would work out! Also, going to point you in the direction of this similar muffin, in case you are a chocolate lover like me. https://thenaturalnurturer.com/veggie-loaded-chocolate-protein-muffins/
This was my first time baking with lentils or cooking them at all! I wanted to make a double batch, but we were short about 5 ounces of pumpkin, so I threw a medium banana in, which worked just fine. I also used half whole wheat flour and half bread flour to use up some bread flour we had on hand, and this made the muffins a little denser, but they still tasted great! Thanks for another great recipe!
Yay! So glad you loved them!
If I could give this recipe more than five stars, I would. This is easily the best healthy muffin recipe I’ve ever tried. It honestly might just be the best muffin recipe I’ve ever tried, period. Recipe is easy to follow, and quick to make. The muffins are lightly sweet, and very filling, making them perfect for breakfast. I’m not sure how it’s possible, but these muffins are somehow fluffy *and* dense at the same time. The crumb is simply incredible! I used white whole wheat *pastry* flour, which is more finely milled than regular whole wheat, and the texture was divine. I also used canned lentils (drained and rinsed), and they worked perfectly, and made the recipe come together super quick. One can of lentils is enough to make double batch of muffins. Absolutely incredible recipe, thank you for sharing!
Wow, Abigail! I am so glad you loved them so much! Thank you for coming back and sharing!