One-Bowl Blueberry Zucchini Flax Muffins
I have made these flax muffins so many times! Full of feel-good ingredients like whole wheat flour, ground flax, Greek yogurt, and juicy blueberries, but still incredibly moist and tender thanks to the addition of grated zucchini and applesauce. Mixed up in one bowl with no squeezing the zucchini required, these hearty muffins make such a satisfying breakfast, pre-workout snack, or get-me-through-until-dinner afternoon situation.

The Flax Muffins That Aren’t Dry Hockey Pucks
I know what you’re thinking…flax muffins? As soon as flax or bran enter the chat, people tend to picture dense little hockey pucks pretending to be breakfast. But I swear these blueberry zucchini flax muffins are absolutely not that situation. Yes, they’re full of hearty, feel-good ingredients. But the added fruit and veg help keep them moist and they’ve got that hearty, satisfying texture that actually keeps you full, but still feel soft enough that you genuinely want to eat them.
And honestly, that’s exactly why I keep making them on repeat. These muffins wear a lot of hats that most muffin recipes just don’t. Like, they serve a purpose beyond just being a sweet baked good to eat with your coffee or hand to your hanrgy kid to appease their belly for 37 minutes. They’re legit filling enough to power busy mornings, make such a good pre-workout snack, and are one of those breakfasts that really holds my daughter over when paired with a smoothie before school. They’re also super blueberry-forward with the zucchini tucked quietly into the background, which honestly feels like the best of both worlds. Hearty and nourishing, but still very much yum. m
Also, guys…they’re genuinely easy. One bowl, no squeezing the zucchini, and done baking in 20 minutes. I’ve made them with both fresh and frozen blueberries and both work beautifully. The only thing I’ll say from experience is don’t overmix the batter once the flour and flax go in. Whole wheat muffins can lose their fluffiness pretty quickly if the batter gets overworked, so a gentle hand makes a big difference here. If you already love my oatmeal carrot muffins or morning glory muffins for that hearty, practical breakfast energy, these definitely live in that same lane…just with a super blueberry-forward twist.
Let’s make these muffins together! Just and you and me…











One-Bowl Zucchini Blueberry Flax Muffins
Ingredients
- 1 cup (115 g) grated zucchini , do not squeeze out the moisture
- 2 large eggs
- ⅔ cup (162.67 g) unsweetened applesauce
- ½ cup (118.29 ml) plain Greek yogurt
- ⅓ cup (78.86 ml) maple syrup
- ⅓ cup (78.86 ml) avocado oil
- 2 teaspoons vanilla extract
- 1 teaspoon baking powder
- ½ teaspoon baking soda
- ½ teaspoon salt
- 1 teaspoon ground cinnamon
- ¼ teaspoon ground nutmeg
- 1 cup (102 g) ground flaxseed
- 1½ cup (225 g) whole wheat flour
- ⅔ cup (98.67 g) blueberries, + extras for topping
Instructions
- Heat the oven to 375℉. Line a standard muffin tin with paper liners or grease with oil spray.
- In a large bowl, whisk the grated zucchini, eggs, applesauce, oil, maple syrup, vanilla, and yogurt until combined.
- Whisk in the baking powder, baking soda, salt, nutmeg, and cinnamon.
- Add the ground flax and flour and then mix with a large spoon or rubber spatula until all the ingredients are just combined. Do not over mix. Over mixing can lead to dense muffins and we are going for fluffy.Fold in the blueberries.
- Scoop the batter into each muffin cup, filling almost to the top. Top the muffins with extra blueberries, if desired.
- Bake in a 375℉ oven until for 20-22 minutes or until the muffins are lightly golden on top. TIP: if you have a kitchen thermometer, bake until the muffins have an internal temperature of 200℉. Many ovens do not bake true to temp, so this trick will ensure your muffins are baked through but are not over baked.
- Let the muffins cool in pan for about 10 minutes before enjoying warm or allow them to cool fully then store in an airtight container in the fridge for 4 to 5 days or well wrapped in the freezer for 1 month.
Notes
- Replace the blueberries with raspberries.
- You can use frozen blueberries, however they will turn your muffins a bit of a purple color!
- Swap the maple syrup for honey, if you prefer.
- Make them as mini muffins, baking for about 13-15 minutes.
- If you have a kitchen thermometer, cook until the muffins have an internal temperature of 200℉. This will ensure they are cooked through, but not overcooked.
- Replace the applesauce with mashed ripe bananas.


My daughter is dairy free. What can I sub for the Greek yogurt? (Besides the obvious, dairy free yogurt)
You could add more applesauce, mashed banana or replace it with 1/3 cup dairy free milk
Can I sub a gfree 1:1 flour for the whole wheat flour? 🙂 They look so delicious!!
I haven’t tested it with GF flour but the 1:1 gluten free flour almost always works for me in place of whole wheat flour, so I’d say yes! If you try it, let us know how it goes!
I do! I think that should work just fine!
How could I substitute fresh Blueberries for frozen Blueberries? Would I have to do anything to them first?
They should swap out easily with no real changes!
Love all your recipes! Do you think I could sub oat yogurt here, or oat buttermilk? (Oat milk plus lemon) we are dairy free. Thank you
Sounds yummy. Any ideas for a different gluten free flour? almond flour is high in oxalates and some of us have to reduce it in our diet.
Thank you!
I haven’t tested these with gluten free flour, but the cup-for-cup gluten free flour blends almost always work well for me when replacing whole wheat flour
These muffins are so moist and delicious! I absolutely love this recipe! I had all of the ingredients so that was a bonus but they are easy to get ingredients. And I feel good knowing that the ingredients are so healthy! I couldn’t decide if they were sweet or savory so whichever person you are they will work for you!
So glad you enjoyed these so much, Brenda! I love how they are sweet without being overly sugary and the nuttiness from the flax is just so nice! Thanks for taking the time to leave a review!
Do you think subbing almond flour for the whole wheat would work? Or maybe half oat flour half almond flour? I don’t keep whole wheat on hand but these look amazing and I’d love to try.
Hi Abi! I haven’t tried these with almond flour but I know many people swear by it as a swap for whole wheat flour. Oat flour too often works! I’d start with half of each to swap the whole wheat flour. Let us know how they turn out!
It’s almost unbelievable that you can have this many nutrient-dense ingredients and still make a delicious muffin! It was also nice to make them in one bowl and not need to squeeze out moisture from the zucchini. Thumbs up from my husband and me!
So happy to hear that you and your husband loved these muffins as much as we do!
I’ve been waiting for this recipe to hit the blog because blueberries and zucchini are two of our favorites! They are delicious–so worth the wait for the recipe indeed. Having followed the to wring moisture from zucchini (or not) and if you do wring it when to measure it discussion, I appreciate your including it in recipes now. In addition the temperature test is so much more accurate than a toothpick to check when muffins are ready to come out of the oven.
I’m so glad you enjoy these as much as we do, Tammy. And I am so glad that my tips + tricks are useful! It is always nice hearing that those little extra notes are truly helpful and worth adding!
I love NN muffins, but this one didn’t work out for me sadly. Way too moist after baking, and it did feel like a lot of liquid ingredients. I subbed in wheat bran 1:1, and everything else was the same. Big fan, just wanted to share my experience with this one!
Hi Cameron. I’m sorry to hear that these didn’t work out for you the same way they did for me + other readers. I always appreciate honest, thoughtful feedback, as it helps me create better recipes or look at current recipes to figure how to explain better/improve. I’ve had good luck swapping ground flax and bran in other recipes, but perhaps not so much this one. There is extra liquid in these since the flax absorbs a good amount. I am guessing that is what the issue was. However, I was planning to make them this week and will double check the amounts to make sure there isn’t a typo somewhere in the measurements❤️
My toddler and I loved these! She’s been super picky about her veggies lately so this muffin was a win. They were moist, just sweet enough, and had omega 3’s and greens I’d hope she’d eat (and that I want for myself too)!
So happy these were a hit! I remember how tricky that selective toddler phase was + delighted these were a win for you both, Allie❤️
I was gifted some zucchini and this was the first recipe i thought of…but first i made the salsa verde enchiladas, lol. These muffins were so good! The only change i made was using egg beaters and extra blueberries, probably a cup. Will definitely make these again!
I love how zucchini is such a versatile veg! I’m so delighted you enjoyed these so much, Lauren. These muffins quickly have become one of my favorites on the site!
Do you think I could sub coconut oil for avocado oil? I can’t wait to try this recipe.
Yes that would work totally fine. Just make sure to melt it first so it doesn’t get clumpy in the batter 🙂
Our new favorite muffins! Honestly, every muffin recipe from TNN has been a hit. These are perfect for an after school snack or breakfast on the go. 7 year old approved!
I love how hearty these are in all the ways! So glad they were such a success in your house too, Devan! And being 7 year old approve is as good as it gets for a review!
These are amazing. I subbed GF flour for whole wheat and they are incredible.
Yay! These muffins are probably one of my favorites and I am so glad you love them as much as I do, Nicole!
Would love to make this as ingredients are healthy. You are so creative. Could we have measurements in metric please. Thank you
Done!
No one else seems to have this problem, but my batter was so thick I had to add a bit of milk to help mix it all together. Not sure where I went wrong. Is the batter supposed to be thicker than other muffin recipes? Also, just confirming if the flaxmeal is 160g? I couldn’t add anymore after 90g as it was getting too thick, and I believe flaxmeal do absorb a lot of liquid as well. I did not add all of the maple syrup called for as we are on a low sugar diet, but regretted afterwards as they are not sweet at all. But the muffins do smell amazing when they were baking, and tasted good with yoghurt and a bit of maple syrup drizzled over.
Hi Lyn, the batter is thicker than most muffin recipes due to the added flax and whole wheat flour…both of which absorb a lot of moisture. I also find that over mixing can thicken the bater more, so that also might have been an issue. I totally get reducing the maple syrup for personal dietary reasons, but there is not really any other ingredient that will sweeten these up significantly and it also does add moisture to the batter since it is a liquid sweetener. I’m glad they are still enjoyable with a little topping!
Bought applesauce to make these then forgot and ate the rest of the yogurt. Bought yogurt but forgot and used the zucchini elsewhere. So ended up grating an apple for these. Just bought zucchini to make another batch correctly—so goo though.
One question though—the muffin papers stuck to them pretty badly, esp the bottoms. Any ideas why?
Because I don’t add as much oil/butter to my muffin recipes as a traditional muffin recipe, I find this happens sometimes. Especially with uncoated paper liners. I’d say give your liners a quick spray with cooking spray or just coat a muffin tin generously with oil and skip the liners. I like the brand If You Care for liners. They are compostable and have food grade silicone coating and almost nothing sticks to those!
Made these with my toddler because he’s never met a blueberry muffin he doesn’t love. They are kind of perfect IMO – Moist, lightly sweet, a little nutty. They are great for meal prep or having on hand for easy snacks because they freeze & reheat in the microwave (30s) so well.
Yesssss! Blueberry muffins are kinda the best, IMO, and these are probably my favorite. I jusy love how hearty they are for being so light. Glad this recipe was a hit, too, Erin!
These are so fantastic that we will make them again tomorrow. We subbed two bananas for the applesauce. We have to replace the muffin liners that we used with a 9x 12 pan (we’re moving/can’t find the muffin tins), do you think this will work as well, how would we need to adjust it if at all?
Hi Alyson, I *think* it would work in a 9×12 pan, but I am unsure how the baking time would change since I’ve never tried it with this recipe. I’d keep the temp the same and start checking it after about 35 minutes of baking. If you have a kitchen thermometer handy, bake it until it has an internal temp of 200F in the middle and you should be good!
Another awesome muffin recipe. These we so light & fluffy and the blueberries added that pop of sweetness. I read a few reviews & someone said 1 cup of flax was too much, batter was too thick. took that into consideration & cut ground flax down to 3/4 cup (I’m thinking that not all ground flax is the same, some brands are 60 kCal per 2 TBLS but my current bag said 90 kCal per 2 TBLS) so that’s another reason I reduced the flax. and I’m so glad I did because these muffins turned out perfect, so delicious, hubs loved them too. Will definitely make these again, thank you:)
So glad you love these as much as I do, Erin! That is an excellent note about the ground flax. I consistently use the same brand, so it is something I hadn’t noticed! I’ll try you amount in my next batch with a different brand of flax and adjust the recipe or notes if needed. So appreciate you sharing.
I bake in a propane oven so adjusted the temp a little for my personal oven but the taste of these were so so so so good! Every weekend I bake three dozen muffins to share with friends and these were a HIT! Even people who usually grab my chocolate blueberry protein muffins switched to this and loved it! The directions were straightforward and simple to follow. I loved that this was a quick to come together recipe. I did let them rest 10 minutes in the muffin cups before popping in the oven- This will be a new regular for me. Thank you for another staple recipe in our home!
Your review made me smile, Jill! The fact that a flax muffin won out over a chocolate muffin is just pure magic! So glad these are such a hit for you and I deeply appreciate you taking the time to leave a review!
These turned out SO good! My whole family loved them! I used frozen blueberries and it turned out great…I will definitely be making these over and over.
Yay! I am so happy to hear that, Kristi!
I really didn’t think that you could put a cup of ground flax in a recipe without it drying the whole thing out. I was so wrong! These are absolutely delicious! Thank you for sharing your great recipes with us all!
Yay! Thanks for trusting the process and my kitchen creations! So glad you loved these as much as we do!
These came out fine using 1:1 GF flour! Very tasty.
Awesome to hear! Glad you love them too!
Thank you! These are delicious! My 86 year old father really enjoyed it. Subbed raisins for the blueberries, but otherwise followed the recipe exactly. I used a small shred on the zucchini and packed it pretty tight to one cup. I imagine it could have been too moist with blueberries, so maybe weighing the zucchini is important to manage the moisture content.
So glad these won you dad over, M! I agree that weighing is a more foolproof way of measuring veggies. I have been hesitant focus on weight measurements because, from my understanding, many home cooks here in America don’t have a kitchen scale. But that might be changing and something to work into coming recipes.
These muffins are delicious and requested often in our home! My husband, who is a relatively picky eater, loves them too! Thank you for such wonderful recipes!
I’m so glad these are such a hit in your home, Eleanor!
Delicious! This muffin is in our regular rotation. I usually add nuts to the batter and on top.
Oh love the addition of nuts, Christy! I bet that is so good in these
These are delicious and I love your trick for checking the muffin temp. Ever since I started doing that, no more dry muffins! Thank you also, I subbed yellow squash for zucchini this time and it turned out great!
This makes me so happy to hear! Yay for perfectly moist muffins—so glad the temp check tip is a game changer for you! Love the yellow squash swap too. Thanks so much for sharing!
Can I omit the maple syrup or honey? Wanting to make these for my 8 month old and trying to avoid sweetener.
Hi Erika, if you want to omit the maple syrup or honey, I would replace it with more applesauce or mashed bananas. Just an FYI that these muffins will be very mildly sweet without it!
Just made these tonight! Have all the ingredients I am looking for for a healthier option for myself and kids AND they are so moist and tasty!!
Oh yay! I’m so glad you enjoyed this one as much as we do. They are so hearty but also…so dang tasty! Thanks for coming back and sharing, Adrian!
Have made this numerous times and I love them! I substitute huckleberries instead of blueberries. But just want to mention that I don’t believe that they have 24 g of protein per muffin, but closer to 6 to 7 g of protein per muffin.
Oh man! Huckleberries?! That sounds AWESOME! And you’re right, they don’t have 24g of protein… they have 7. You are looking at the carbs 🙂
can I use low-fat plain Greek yogurt instead of full fat?
Yes! Low fat works fine, I just found that fat free had too much added water for these
Do we use course kosher salt?
Baked them in a donut pan to make them feel more like a “treat” to the littles at Easter brunch. They were a big hit for the kids and adults!
Oh Yay!!! I love the donut pan idea!
Love this recipe! Always looking for a quick thing to grab while I’m breastfeeding, and these are perfect! Filling, healthy, and yummy!
These are such a sleeper recipe here on TNN. So good and super filling. Love the idea of using them as a nursing snack! Totally going to make them for the next friend that has a baby!
Soooo good – not too sweet and so good for you. Love that there is no refined sugar and they are still plenty sweet! I used all purpose flour rather than WW but other than that I followed the recipe just as written. This is week three making your muffins for meal prep – we have done chocolate zucchini, carrot cake and now these! They are all winners in my book!
Oh I love that you love them as much as I do!
These muffins are just wonderful! Made ours with mashed banana. Great nutrition profile, just sweet enough, delightful texture….happy to have these in rotation. Perfect for school snack/lunch. Thank you!
SO glad you loved these for all the reasons we do! Thanks so much for popping back and sharing, Hana!
Excellent! Made this today with zucchini from the garden and my husband said “you can make these for me anytime” after he ate 2.
The only change I made was use white wheat flour.
Thanks again
Yay!!! I am so glad they were such a success!!!
Delicious! Husband and 7-year-old both love them. I used all-purpose flour and vegetable oil and they turned out great. Makes more than a dozen, though, so I had to break out a mini-muffin tin as well for the overflow. Only complaint is that they stuck to the paper liners. Will try just greasing the tin next time.
So glad you loved them, Sarah! And abut them sticking to the liners, since my muffin recipes typically call for less oil than a traditional muffin, greasing regular paper liners is super helpful so they release easier. I use the liners from If You Care because they are compostable but also have a natural food grade silicone coating that I swear sticks to nothing! I’m actually working on going through all my muffin recipes and updating them with that little tip!
I used Bob’s Red Mill gluten free baking flour, in lieu of whole wheat. Texture was great. Really delicious, easy recipe. I will definitely make again. They came out perfect. Thanks!!
Yay! I am so glad you were able to easily modify them for your needs and loved the results! We love these here too!
Made with my 3 year old. She also loved eating them. Thank you. !
Oh I am so glad, Andrea! Thanks for coming back and sharing!